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For high light level experiments we recommend the photodiode array imaging system. Since photodiodes do not saturate at high light intensities this system is well suited for fluorescence measurements from bulk stained tissue and for absorption measurements.

The NeuroPDA-III uses the WuTech® H-469V photodiode array. The new H-469V photodiode array (PDA) performance is very similar to the previous array used in the NeuroPDA system. Using surface mount technology and low power consumption components the entire circuitry of the H-469V (The diode array, first and second stage amplifiers and multiplexer) fits inside one smaller box. ( Compare size of H-469IV and H-469V)

This arrangement eliminates the need for an amplifier rack and the heavy cable bundles used with previous generations of the PDA. The new systems are much more compact, much lighter and easier to handle and ship. Moreover, they are much more reliable and easier to operate as problems like 60 Hz line noise, oscillations and ground loops are eliminated.


Dynamic Range
More than 18 bits (100 db); the system can record signals as small as 10-5 of the resting light level.

Frame Rate
The photodiode array system was designed for high speed data acquisition: 1.6 Kfps (including 464 diodes and 8 electrodes). The user can sample a subset of the array to further increase the frame rate.

Dark Noise

Low, close to the Johnson noise of a 100 M-ohm resistor.

Signal-To-Noise Ratio
Near optimal signal-to-noise ratio for a broad range of light levels. Silicon diodes have quantum efficiencies near 1.0. Unlike a CCD camera, the photodiodes do not saturate at light intensities achieved in some neurobiological experiments. Base-line subtraction (AC coupling) in individual channels offers an effective A-to-D resolution of more than 20 bits with the 12 bit A-to-D converter.

Comprehensive Software Designed With Neurobiology and Physiology In Mind
Neurobiologists typically analyze voltages using electrodes. The software includes the data format that neurobiologists are used to analyzing - wave forms over time for each photodiode input. NeuroPlex also creates pseudo-color images and "movies". Further, the system provides 8 BNC inputs sampled and displayed with the photodiode data. A mouse driven point-and-click interface shows multiple views of the data for clarity and simplicity. Comprehensive analysis capability is provided.

Integrated System
Includes all the necessary components from the photodiode array through the data acquisition and processing unit (diode array, amplifiers, multiplexers, analogue-to-digital converter, computer, and output control panel).

Experimental Control
The system can control a shutter and a stimulator. Three kinds of triggering for data acquisition/averaging are available:
1. Triggered by user/computer.
2. Triggered by an external event.
3. Triggered by an event recorded on one of the 472 channels.


Hardware Overview


The following are the components of WuTech H-469IV

464 Element Diode Array:
Fiber optic bundle tightly packed at the image plane leads to individual photodiodes. Photodiode specifications include: dark current less than 10 pA, shunt resistance greater than 50 G-ohm, radiant sensitivity (630nm) 0.42 A/W and terminal capacitance 30 pF.
· For more information about the array


Pre-amplifiers:

The current-to-voltage converter has three selectable feedback resistors on each channel (5, 50 and 500 M-Ohm), offering a choice of gains for the first stage (pre-amplifier). The 500 and 50 M-Ohm are appropriate for measurements with fluorescent dyes in single cells. The 5 M-ohm resistor is intended for use with absorption dyes and bright fluorescent preparations.

Post-amplifiers:
The post-amplifiers (second stage) offer amplification of 1,10,50 and 500 fold. They also contain a 2-pole RC low-pass filter of 800Hz and an AC high-pass filter with a choice of 2 time constants (200 msec and 2,000 msec).

Defective Channels:
The delivered system is specified to have fewer than 3% defective channels (typical, fewer than 1%). The NeuroPlex software allows the user to deal will defective channels in two ways: 1) by substituting the data in a defective channel by the average of the data from the neighboring detectors (Fudge Array) or 2) by replacing the data from that channel with a flat line (Omit Array).

Multiplexer and Analog-to-digital Converter:
512 channel multiplexer and A-to-D converter with 12 bit resolution.

Input/Output Panel:
Includes 8 electrode BNC inputs and 16 output BNC connectors to control a shutter and a stimulator. The input channels are sampled and displayed with the data from the diode array.

Power Supply:
Provides DC power for all components.

Computer:
PC computer for acquisition and analysis, Monitor not included. We recommend at least 1280x1024 (17 inch) resolution. 1600x1280 (21 inch) is also supported.

*The hardware is manufactured by WuTech Instruments. It is a 3rd generation commercial version of the diode array system developed by the electronics shop of the Department of Physiology, Yale University School of Medicine (New Haven, CT).

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Physical dimensions of the diode array
Because the WuTech diode is larger and heavier than a standard camera, special supporting hardware may be necessary to mount it on an inverted microscope or on any horizontal port. The module is 11" x 8" x 13" and weighs 20 lbs. The fiber optic array has a diameter of roughly 20 mm. Many microscopes have real images of this size at their output ports. The diode array comes with a C-mount connector.

Arrangement of apparatus

The distance between the diode array and the computer must be less than 1.5 meters. Further, it is suggested that the component rack sit on the vibration isolation table with the microscope to limit vibration added from the cables running off the table.

Computer
We strongly recommend reserving the computer which comes with NeuroPlex for this function only. The reasons are two-fold. First, data acquisition places large demands on the computer's resources. Second, it would be very difficult for RedShirtImaging to troubleshoot any problems that might arise when attempts are made to add additional hardware and software.

In one example, a user tried to install a SCSI card. This generated a conflict with the a-to-d interrupt request and the SCSI installation did not work. Then uninstalling the SCSI left the a-to-d card non-functional.


Shutter
A shutter which can be driven by a 5-volt pulse should be available; shutter opens at 5 volts, closes at 0 volts. In addition to limiting the amount of photo-toxicity, the use of a shutter is essential for some frequently used features of the software. We use shutter drivers and shutters from Vincent Associates. Choose a shutter opening that is larger than the diameter of the incident light beam. We mount the shutter independently of the microscope so that its vibration does not affect the recording.

IDL licensing
The NeuroPlex software is written on an IDL platform. A full IDL license is supplied with our cameras allowing the end user to modify or add functionality. We encourage users who are interested in modifying the software to contact us first.


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